PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00015g10002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family M-type_MADS
Protein Properties Length: 168aa    MW: 18866.6 Da    PI: 5.1656
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00015g10002.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF337.5e-1112381541
                              HHHHHHHHHHHHHHHHHT-EEEEEEE- CS
                    SRF-TF 15 kRrngilKKAeELSvLCdaevaviifs 41
                              +  + + KKA+ELS+LCda+va++if 
  Peinf101Scf00015g10002.1 12 RKIQSLYKKAQELSTLCDAKVAIVIFK 38
                              5557899******************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006611.914139IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.44E-13884IPR002100Transcription factor, MADS-box
PfamPF003193.4E-10839IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MDIVSERALF ARKIQSLYKK AQELSTLCDA KVAIVIFKNG ENTPILWPSQ AVAEEIARTF  60
RNTDEVQKVK KLVKLENYLL EKLQDRAEII RKKNEEMEME VLFNHLVVGK NINELDARQL  120
IGLKKLFEVK KAKAMAASQD FGLGGESGTS SGPQEAGKDN DAVEENDD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ1685080.0FJ168508.1 Petunia x hybrida type I MADS box transcription factor (MADSy3) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009771864.13e-32PREDICTED: agamous-like MADS-box protein AGL90
RefseqXP_016446189.13e-32PREDICTED: agamous-like MADS-box protein AGL90
TrEMBLB6DT582e-97B6DT58_PETHY; Type I MADS box transcription factor
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37820129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31640.18e-11AGAMOUS-like 92